The McCallum Graduate School of Business offers full-time and part-time MBA programs with concentrations in Accounting, Finance, Law and Taxation, Leadership, Marketing, and Strategic Healthcare Management, as well as a STEM MBA program with majors in Accounting Analytics, Business Analytics, Financial Analytics, and Information Systems and Technology. A cohort-based MBA program is also available to employees of Beth Israel Lahey Health (BILH).

In addition, Bentley offers Master of Science degrees in Accounting, Business Analytics, Finance (plus an optional Financial Analytics track), and Human Factors in Information Design.